PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10955_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 487aa    MW: 55239.4 Da    PI: 9.6767
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10955_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.31.5e-14404428226
                                           -S---SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                           ktelC+ +++tG C+yG++C+FaHg
  cra_locus_10955_iso_1_len_1639_ver_3 404 KTELCNKWQETGMCPYGENCQFAHG 428
                                           9***********************8 PP
2zf-CCCH17.29.1e-06441465125
                                           --S---SGGGGTS--TTTTT-SS-S CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                                           ykte Cr  +++  C+yG rC+F H
  cra_locus_10955_iso_1_len_1639_ver_3 441 YKTEVCRMVLAGDMCPYGHRCHFRH 465
                                           9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.2E-18398435IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-11399434IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-8402429IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.478402430IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10404428IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-11436467IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-8436469IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-5440467IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.99440468IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MELISTGSSN CRAFSMITTR PRLRRNPIKI ERFGGKPKQR RIWKIRKLRI KFVSPLKVWK  60
KVKKVYMNLM FILSGGCRSS SGALTACGVP SARRIAYENN KSSDELEEKK SSTSLKDFLH  120
DEMNRGDIQQ XDDTNSSXIS SANLRNRGHN TADVAKSSFT TDTSSSQRQY FTKNPFLSAT  180
STEDLDSSEA YFYSSLLSQS SNYSPSDTSF DDAMADNFAT ERRLCQASFV LEYQQLYNRY  240
TLCLARLQES MKEVDCFRQE NDALRVANAD LAQRLSQLSQ ATIQNCLLSD FNRLKIGNDP  300
PPNIIPNPKS LIDRARTHRQ NPPTERVSFP KSISVRSSGY LKIKPQGRNI NTKAGDQTQS  360
KCSIPPRVNS PYDPGSQRVY VPGPGGKREE AAAEFEVYNQ GMIKTELCNK WQETGMCPYG  420
ENCQFAHGIK ELRPVIRHPR YKTEVCRMVL AGDMCPYGHR CHFRHTLTDE EKLIATKYSH  480
ANATXXE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A7e-21404465566Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233706.11e-129zinc finger CCCH domain-containing protein 14
RefseqXP_015065053.11e-129zinc finger CCCH domain-containing protein 14
TrEMBLA0A3Q7F8611e-127A0A3Q7F861_SOLLC; Uncharacterized protein
STRINGXP_009783725.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129