PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10963_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 293aa    MW: 33301.4 Da    PI: 4.8552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10963_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-2076125255
                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                           +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa a+++a+++++g
  cra_locus_10963_iso_2_len_1010_ver_3  76 RYRGVRQRP-WGKWAAEIRDP-----HkaARIWLGTFDTAEAAAIAYDEAALRFRG 125
                                           7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-1376125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-3276134IPR001471AP2/ERF domain
PROSITE profilePS5103224.7976133IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2276134IPR016177DNA-binding domain
SMARTSM003803.8E-3676139IPR001471AP2/ERF domain
PRINTSPR003672.2E-117788IPR001471AP2/ERF domain
CDDcd000181.49E-1584134No hitNo description
PRINTSPR003672.2E-1199115IPR001471AP2/ERF domain
SuperFamilySSF542773.21E-9240293No hitNo description
PROSITE profilePS5174514.55242293IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.1E-10243293No hitNo description
PfamPF005641.9E-7244293IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
ELSEFPFCYD EQLMDWLMEP DHLQSSALTR ENGVAEDQKL DEIIDIMNTS CLDKNTKDYQ  60
QADSFIDNTS GTVRRRYRGV RQRPWGKWAA EIRDPHKAAR IWLGTFDTAE AAAIAYDEAA  120
LRFRGCKAKL NFPERVLLTS EVHAGSTSSS SKPNALPLLP DSFPDLFQYA MLLSSNDHEL  180
PPTSLLPKQI EQHQEEYACF TSRYLHTSSA DASSLSETMK MKNKNQTEGC TLADVAVEDQ  240
SSIIVKAKYG DDMIKFELPL PSRKVKLEEE VKKRLKLSDG SFKIKYLDED GDW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2575136163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2575136466ATERF1
3gcc_A1e-2575136466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FH542e-40EF114_ARATH; Ethylene-responsive transcription factor ERF114
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4897426
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]