PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_110461_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 134aa MW: 14543.8 Da PI: 8.7689

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_110461_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.2	6.9e-44	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPv 73 +CaaCk+lrr+CakdCv+ap+fpa++p+kfa vhk+FGasnv+k+l++l e++r+da+s++vyeA+ar+rdPv cra_locus_110461_iso_1_len_463_ver_3 15 PCAACKLLRRRCAKDCVFAPHFPADDPQKFASVHKVFGASNVSKMLQELGEDQRSDAVSAMVYEANARVRDPV 87 7********************************************************************** PP DUF260 74 yGavgvilklqqqleqlkaelallkee 100 yG+v+ i++lqqq++ l+++la +++e cra_locus_110461_iso_1_len_463_ver_3 88 YGCVAAISSLQQQVDILQTQLAFAQAE 114 ********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.86	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-43	15	112	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MKEMMKGRKL EVASPCAACK LLRRRCAKDC VFAPHFPADD PQKFASVHKV FGASNVSKML 60 QELGEDQRSD AVSAMVYEAN ARVRDPVYGC VAAISSLQQQ VDILQTQLAF AQAEVVQMRM 120 RGGSSASTPA PIPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-46	13	133	9	127	LOB family transfactor Ramosa2.1
5ly0_B	5e-46	13	133	9	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027077308.1	9e-70	LOB domain-containing protein 4-like
Swissprot	Q9SHE9	2e-56	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A2P5CCR0	7e-69	A0A2P5CCR0_TREOI; Lateral organ boundaries domain containing protein
STRING	XP_007133379.1	1e-68	(Phaseolus vulgaris)
STRING	XP_004294159.1	1e-68	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669