PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11057_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 841aa    MW: 92055.2 Da    PI: 7.2077
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11057_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.7e-07426446526
                                           --SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                            Cr++++ G C+ G++CkF+H+
  cra_locus_11057_iso_1_len_3764_ver_3 426 YCRHYLK-GRCQEGSKCKFSHD 446
                                           5******.*************7 PP
2zf-CCCH20.86.9e-07480500525
                                           --SGGGGTS--TTTTT-SS-S CS
                               zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                                           +C+++   G+C++G+ C F+H
  cra_locus_11057_iso_1_len_3764_ver_3 480 PCNNYVTKGFCSRGADCLFSH 500
                                           7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.15421448IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-4422447IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5422446IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4426446IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4426446IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.436450477IPR000571Zinc finger, CCCH-type
SMARTSM003560.04450476IPR000571Zinc finger, CCCH-type
SMARTSM003560.11478502IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5479504IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4480504IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.07480503IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MSHCNALQSV PQHKKRGEAA EEKKLVGVNR LGEAAENNEL LDHDPMETES LLLLQKSSAG  60
VAKEITSSQD NNVNSKLIEG DMLDSMDMIT EANNNNNVDS FMENNQAIDS VVDLITGQKD  120
GCSVANTTAV SLMRQEEVAN QAFFCEVAEA VDSSLEMDMV AEFSRPIEDG KKNSTERNTW  180
PEGIENQLQL KEKELENLIS TSSAMNSSIC LTADDDIEEG EISGDVGIYD EAMHFLLDDD  240
AISLEEKKVE EGQIHKDNID KEKMVCDGGG IGLGKYGRCI SASLNVDNNN DIMKLDRQST  300
RRDPDIYDGH LAERNMEIKK VDGHDIVHET GQIMDQVFGV RGTDNCAASV KVLTSHGQVI  360
SDGTTEVTNE KDNTVETKKR KKGPLSKERK AKKKKKERIK RAEKNRKLGV KRLKLQPIVK  420
QKTVTYCRHY LKGRCQEGSK CKFSHDTIPL TKSQPCCYFA RHSCMKGDDC PFDHQLSKYP  480
CNNYVTKGFC SRGADCLFSH KMEDKGGSST TPNVPKPEFR SPFQTSDSNS KKQVTLCSNP  540
PQDSSGKSLE KKVAQHLQKP AVQVPKGISF FSSPQLSPGV TGKHEQTAQP LKEVNGVKIG  600
HKINSSLGSG PKSNDSMMRV PLRTPKGINF LSFGKAHPLE SGSNKDQGIS ESSLSEPNES  660
TLRRSPPRYD GGAKTENQSG QSSLESETNK CKAADMISPA PRPQGMKFLA FGEIPRDNTN  720
AVGQAGLVCC NTNSGLPLVQ ERENVLDGLK FTNEMPNRLA SSPNPFCQSS NQCGPRNAVG  780
ISSSQKISLL SNTPNSVQKA LQSTLAFAAK FDSQIKLDQA IGTSGVSTKP KKXLNLIEKA  840
H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377381KKRKK
2379395RKKGPLSKERKAKKKKK
3388396RKAKKKKKE