PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11097_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 261aa    MW: 28955.2 Da    PI: 9.3894
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11097_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.73.4e-1098139445
                                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                           k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  cra_locus_11097_iso_5_len_783_ver_3  98 QKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 139
                                          5788*************************9877777766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.2E-890142No hitNo description
SMARTSM003388.6E-1095158IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.43897141IPR004827Basic-leucine zipper domain
CDDcd147087.47E-2399151No hitNo description
SuperFamilySSF579593.02E-799142No hitNo description
PfamPF001703.1E-799139IPR004827Basic-leucine zipper domain
PROSITE patternPS000360102117IPR004827Basic-leucine zipper domain
PfamPF141441.0E-32181256IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
LQSGTFNKTA NSKFPATVPG SQTIQLQKGS QPNLASVSGA HNENWGESNM ADSSSRTDTS  60
TDVDGEDKSQ RVEMGQSAGA GAGAYDSGDK SKEKNMDQKT LRRLAQNREA ARKSRLRKKA  120
YVQQLENSRL KLTQLEQELQ RARQQGVFIS SMGDQSHTLS GNGAMAYDAE YARWLEEHNR  180
HINELRTAVN SHASDSDLRI MIDNVATHFN DVFRLKGSAA KADVFHILSG MWKTPAERCF  240
MWIGGFRPSE LLKLLVSHLE P
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123246.11e-149transcription factor TGA2.3-like isoform X1
RefseqXP_027123247.11e-149transcription factor TGA2.3-like isoform X1
RefseqXP_027175555.11e-149transcription factor TGA2.3-like
RefseqXP_027175556.11e-149transcription factor TGA2.3-like
SwissprotO241601e-132TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A068UMV11e-146A0A068UMV1_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000609261e-131(Solanum tuberosum)