PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11133_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 84aa    MW: 9173.43 Da    PI: 10.1914
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11133_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA25.42e-082181834
                                  GATA 18 gnktLCnaCGlyyrkkg 34
                                          g+ktLCnaCG++y++ +
  cra_locus_11133_iso_1_len_1142_ver_3  2 GPKTLCNACGVRYKSGR 18
                                          89************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.109.7E-5216IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.23E-5242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FIPSLHSNSH KKVLEMRNVD NTNKTNNGAT  60
PAATNPSTGQ RDVIADVKPK IDYI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109479.13e-30GATA transcription factor 8-like
RefseqXP_028109480.13e-30GATA transcription factor 8-like
SwissprotQ9SV303e-26GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A059ACM42e-27A0A059ACM4_EUCGR; GATA transcription factor
STRINGXP_010032183.14e-28(Eucalyptus grandis)
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]