PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11133_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GATA

Protein Properties

Length: 259aa MW: 27935.6 Da PI: 10.6058

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11133_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.7	1.4e-17	160	193	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + cra_locus_11133_iso_4_len_1401_ver_3 160 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 193 99*****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	11.556	154	190	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.2E-16	154	204	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.14E-15	158	217	No hit	No description
Gene3D	G3DSA:3.30.50.10	9.9E-15	158	191	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.63E-13	159	208	No hit	No description
PROSITE pattern	PS00344	0	160	185	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.9E-15	160	193	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MALTFVEDSF SGGGLTVGKE NSSVKETSHN KFHTSSPVSV LESSSSSSSS CSGGKVIPLG 60 SNHRGPQRAR SKRPRPATFN PRPAIRLITP TSSFCETPQP FLSSGVSSES ENFAESVPAR 120 KFPKPEATEQ KKKKKVKLAA PVGPLDTTNQ NTSQQAVRKC LHCEITKTPQ WRAGPMGPKT 180 LCNACGVRYK SGRLFPEYRP AASPTFIPSL HSNSHKKVLE MRNVDNTNKT NNGATPAATN 240 PSTGQRDVIA DVKPKIDYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	75	KRPRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027104975.1	1e-105	GATA transcription factor 8-like
Refseq	XP_027104976.1	1e-105	GATA transcription factor 8-like
Refseq	XP_027158950.1	1e-105	GATA transcription factor 8-like
Refseq	XP_027158951.1	1e-105	GATA transcription factor 8-like
TrEMBL	A0A1S4CA08	1e-101	A0A1S4CA08_TOBAC; GATA transcription factor
TrEMBL	A0A1U7UXU6	1e-101	A0A1U7UXU6_NICSY; GATA transcription factor
STRING	XP_009760862.1	1e-102	(Nicotiana sylvestris)