PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11133_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 344aa    MW: 37122.4 Da    PI: 7.3596
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11133_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-17245278134
                                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                           C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  cra_locus_11133_iso_5_len_1819_ver_3 245 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 278
                                           99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.4E-724332IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.556239275IPR000679Zinc finger, GATA-type
SMARTSM004012.2E-16239289IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-14243276IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-15243302No hitNo description
CDDcd002022.87E-13244293No hitNo description
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
PfamPF003204.3E-15245278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGPNFMDDMD CGSFFDNMDD LIEFPADNDC GNGLVGSGGD CKDFPSIWND ALPDADNIFP  60
GSNCNSASDL SAELSVPYED IIQLEWLSTF VEDSFSGGGL TVGKENSSVK ETSHNKFHTS  120
SPVSVLESSS SSSSSCSGGK VIPLGSNHRG PQRARSKRPR PATFNPRPAI RLITPTSSFC  180
ETPQPFLSSG VSSESENFAE SVPARKFPKP EATEQKKKKK VKLAAPVGPL DTTNQNTSQQ  240
AVRKCLHCEI TKTPQWRAGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FIPSLHSNSH  300
KKVLEMRNVD NTNKTNNGAT PAATNPSTGQ RDVIADVKPK IDYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156160KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027158950.11e-161GATA transcription factor 8-like
RefseqXP_027158951.11e-161GATA transcription factor 8-like
TrEMBLA0A068TWN21e-157A0A068TWN2_COFCA; GATA transcription factor
STRINGXP_009760862.11e-145(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358