PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_111750_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 113aa MW: 13492.1 Da PI: 10.6929

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_111750_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.9	8.2e-12	61	100	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 W++eE ++++a +++G++ Wk++a+ + +R +++ks + cra_locus_111750_iso_1_len_339_ver_3 61 QWSEEELRRFYEAYREHGKD-WKKVAAVLR-NRPVEMVKSLY 100 7***************99.*****.******966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.048	57	108	IPR017884	SANT domain
SMART	SM00717	2.8E-7	58	106	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.12E-12	59	107	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-7	60	99	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-10	61	101	IPR001005	SANT/Myb domain
CDD	cd00167	2.81E-7	62	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
XSTRFFSFRT FSSIWMVMRP ARKSRSVNKW NDYVSEVSPV KDVDSPKGND RRKRKLSDTT 60 QWSEEELRRF YEAYREHGKD WKKVAAVLRN RPVEMVKSLY TMNKAYLSLP EGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	55	DRRKRKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021738084.1	3e-36	protein ALWAYS EARLY 3-like isoform X1
Refseq	XP_021738085.1	3e-36	protein ALWAYS EARLY 3-like isoform X1
Refseq	XP_021738086.1	3e-36	protein ALWAYS EARLY 3-like isoform X2
Refseq	XP_021862140.1	3e-36	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_021862141.1	3e-36	protein ALWAYS EARLY 3 isoform X2
Refseq	XP_021862142.1	3e-36	protein ALWAYS EARLY 3 isoform X3
Refseq	XP_028103931.1	3e-36	protein ALWAYS EARLY 3-like
Swissprot	Q6A332	8e-25	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A0K9RZQ3	7e-35	A0A0K9RZQ3_SPIOL; Uncharacterized protein
TrEMBL	A0A0K9S1C3	7e-35	A0A0K9S1C3_SPIOL; Uncharacterized protein
STRING	XP_010667784.1	4e-34	(Beta vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15899	4	4

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]