PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11227_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 227aa    MW: 26432.6 Da    PI: 8.6613
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11227_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-18761256
                                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                              Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                          rk+ +++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  cra_locus_11227_iso_2_len_1353_ver_3  7 RKKGRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 61
                                          67778999**********************************************9 PP
2HD-ZIP_I/II129.71.1e-41799193
                           HD-ZIP_I/II  1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75
                                          +kk rl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a+k+
  cra_locus_11227_iso_2_len_1353_ver_3  7 RKKGRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQFEAIKA 81
                                          6999*********************************************************************** PP

                           HD-ZIP_I/II 76 enerLekeveeLreelke 93
                                          en++L++++++L++e+++
  cra_locus_11227_iso_2_len_1353_ver_3 82 ENDALQAQNQKLHAEIMA 99
                                          *************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.346363IPR001356Homeobox domain
SuperFamilySSF466894.15E-18565IPR009057Homeodomain-like
SMARTSM003891.6E-17567IPR001356Homeobox domain
PfamPF000461.1E-15761IPR001356Homeobox domain
CDDcd000861.75E-14764No hitNo description
Gene3DG3DSA:1.10.10.608.7E-20870IPR009057Homeodomain-like
PRINTSPR000317.8E-63443IPR000047Helix-turn-helix motif
PROSITE patternPS0002703861IPR017970Homeobox, conserved site
PRINTSPR000317.8E-64359IPR000047Helix-turn-helix motif
PfamPF021834.5E-1763103IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDHNWERKKG RLNMEQVKTL EKNFELGNKL EPERKMQLAR ALGLQPRQIA IWFQNRRARW  60
KTKQLEKDYD ILKRQFEAIK AENDALQAQN QKLHAEIMAL KNREPTESIN LNKETEGSCS  120
NRSENSSDNI KLDISRTTPA IDSHPQTSRP FFPSSLIRPN TAQQLFQTTS SSSRPPPADH  180
HHLIQCQNNN NNNPTATVKE ESSLCNMFCT IDDQTGFWPW LEQHHFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15563RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520111.11e-114homeobox-leucine zipper protein ATHB-13
RefseqXP_015575250.11e-114homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-92ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA1DR781e-160A1DR78_CATRO; DNA-binding protein (Fragment)
STRINGXP_002520111.11e-114(Ricinus communis)
Publications ? help Back to Top
  1. Vom Endt D,Soares e Silva M,Kijne JW,Pasquali G,Memelink J
    Identification of a bipartite jasmonate-responsive promoter element in the Catharanthus roseus ORCA3 transcription factor gene that interacts specifically with AT-Hook DNA-binding proteins.
    Plant Physiol., 2007. 144(3): p. 1680-9
    [PMID:17496112]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  4. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]