PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_112403_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 135aa MW: 15665.1 Da PI: 9.9941

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_112403_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112.3	5.3e-35	14	113	49	129
NAM 49 k.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel.............vg 101 + k+ ++ekew+fF++rd+ky+tg r+nrat+sgyWkatgkdke++++++++ vg cra_locus_112403_iso_1_len_404_ver_3 14 MlwdaeraKM-GSEKEWFFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYNSNNNKsgkgvggggncvvVG 85 3344443233.4678************************************955556778888888999 PP NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 +kktLvfykgrapkgek++Wvmheyrle cra_locus_112403_iso_1_len_404_ver_3 86 MKKTLVFYKGRAPKGEKSNWVMHEYRLE 113 **************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.853	1	135	IPR003441	NAC domain
SuperFamily	SSF101941	6.67E-37	21	135	IPR003441	NAC domain
Pfam	PF02365	4.8E-18	26	112	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
XXXXXXXFPD DLMMLWDAER AKMGSEKEWF FFCQRDRKYP TGMRTNRATE SGYWKATGKD 60 KEIYNSNNNK SGKGVGGGGN CVVVGMKKTL VFYKGRAPKG EKSNWVMHEY RLEGRFSYYN 120 FPKGAVKDEW VVCRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-28	16	135	60	162	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-28	16	135	60	162	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-28	16	135	60	162	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-28	16	135	60	162	NO APICAL MERISTEM PROTEIN
3swm_A	6e-28	16	135	63	165	NAC domain-containing protein 19
3swm_B	6e-28	16	135	63	165	NAC domain-containing protein 19
3swm_C	6e-28	16	135	63	165	NAC domain-containing protein 19
3swm_D	6e-28	16	135	63	165	NAC domain-containing protein 19
3swp_A	6e-28	16	135	63	165	NAC domain-containing protein 19
3swp_B	6e-28	16	135	63	165	NAC domain-containing protein 19
3swp_C	6e-28	16	135	63	165	NAC domain-containing protein 19
3swp_D	6e-28	16	135	63	165	NAC domain-containing protein 19
4dul_A	6e-28	16	135	60	162	NAC domain-containing protein 19
4dul_B	6e-28	16	135	60	162	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015866460.1	5e-57	NAC domain-containing protein 46-like
Refseq	XP_015902347.1	5e-57	NAC domain-containing protein 46-like
Swissprot	Q9FK44	6e-54	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A2R6S1T2	7e-56	A0A2R6S1T2_ACTCH; NAC domain-containing protein
STRING	EOY10726	3e-55	(Theobroma cacao)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]