PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_112403_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 193aa MW: 22184.1 Da PI: 8.8053

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_112403_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.7	7.7e-56	19	160	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatg 71 lppGfrFhPtdee++++yL++kv ++ +++ ++i evd++k+ePwdLpk++k +ekew+fF++rd+ky+tg cra_locus_112403_iso_3_len_1012_ver_3 19 LPPGFRFHPTDEEIISYYLTEKVMNSGFSA-KAIGEVDMNKCEPWDLPKRAKMgSEKEWFFFCQRDRKYPTG 89 79*************************9.89***********755542678*********** PP NAM 72 krknratksgyWkatgkdkevlskkgel.............vglkktLvfykgrapkgektdWvmheyrle 129 r+nrat+sgyWkatgkdke++++++++ vg+kktLvfykgrapkgek++Wvmheyrle cra_locus_112403_iso_3_len_1012_ver_3 90 MRTNRATESGYWKATGKDKEIYNSNNNKsgkgvggggncvvVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 160 *******************955556778888888999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.81E-57	15	165	IPR003441	NAC domain
PROSITE profile	PS51005	51.825	19	186	IPR003441	NAC domain
Pfam	PF02365	3.1E-30	20	159	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MVLNINEEDR EDDHDLMDLP PGFRFHPTDE EIISYYLTEK VMNSGFSAKA IGEVDMNKCE 60 PWDLPKRAKM GSEKEWFFFC QRDRKYPTGM RTNRATESGY WKATGKDKEI YNSNNNKSGK 120 GVGGGGNCVV VGMKKTLVFY KGRAPKGEKS NWVMHEYRLE GRFSYYNFPK GAVKVSTYLA 180 IGCFSNYNFF SFA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-46	12	159	13	145	NAC domain-containing protein 19
3swm_B	1e-46	12	159	13	145	NAC domain-containing protein 19
3swm_C	1e-46	12	159	13	145	NAC domain-containing protein 19
3swm_D	1e-46	12	159	13	145	NAC domain-containing protein 19
3swp_A	1e-46	12	159	13	145	NAC domain-containing protein 19
3swp_B	1e-46	12	159	13	145	NAC domain-containing protein 19
3swp_C	1e-46	12	159	13	145	NAC domain-containing protein 19
3swp_D	1e-46	12	159	13	145	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002277068.1	2e-89	PREDICTED: NAC domain-containing protein 92
Refseq	XP_010653830.1	2e-89	PREDICTED: NAC domain-containing protein 92
Swissprot	Q9FK44	4e-82	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1Q3D0Z8	1e-88	A0A1Q3D0Z8_CEPFO; NAM domain-containing protein
TrEMBL	A0A2P5FRE8	2e-88	A0A2P5FRE8_TREOI; NAC domain containing protein
STRING	VIT_08s0007g07640.t01	7e-89	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]