PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_112403_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 182aa MW: 21037.8 Da PI: 8.5732

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_112403_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.9	6.4e-56	19	160	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgk 72 lppGfrFhPtdee++++yL++kv ++ +++ ++i evd++k+ePwdLpk++k +ekew+fF++rd+ky+tg cra_locus_112403_iso_4_len_759_ver_3 19 LPPGFRFHPTDEEIISYYLTEKVMNSGFSA-KAIGEVDMNKCEPWDLPKRAKMgSEKEWFFFCQRDRKYPTGM 90 79*************************9.89***********755542678************ PP NAM 73 rknratksgyWkatgkdkevlskkgel.............vglkktLvfykgrapkgektdWvmheyrle 129 r+nrat+sgyWkatgkdke++++++++ vg+kktLvfykgrapkgek++Wvmheyrle cra_locus_112403_iso_4_len_759_ver_3 91 RTNRATESGYWKATGKDKEIYNSNNNKsgkgvggggncvvVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 160 ******************955556778888888999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-60	15	182	IPR003441	NAC domain
PROSITE profile	PS51005	57.136	19	182	IPR003441	NAC domain
Pfam	PF02365	2.6E-30	20	159	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MVLNINEEDR EDDHDLMDLP PGFRFHPTDE EIISYYLTEK VMNSGFSAKA IGEVDMNKCE 60 PWDLPKRAKM GSEKEWFFFC QRDRKYPTGM RTNRATESGY WKATGKDKEI YNSNNNKSGK 120 GVGGGGNCVV VGMKKTLVFY KGRAPKGEKS NWVMHEYRLE GRFSYYNFPK GAVKDEWVVC 180 RV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-49	12	182	10	162	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-49	12	182	10	162	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-49	12	182	10	162	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-49	12	182	10	162	NO APICAL MERISTEM PROTEIN
4dul_A	9e-49	12	182	10	162	NAC domain-containing protein 19
4dul_B	9e-49	12	182	10	162	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002277068.1	1e-95	PREDICTED: NAC domain-containing protein 92
Refseq	XP_010653830.1	1e-95	PREDICTED: NAC domain-containing protein 92
Swissprot	Q9FK44	7e-88	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1Q3D0Z8	1e-94	A0A1Q3D0Z8_CEPFO; NAM domain-containing protein
TrEMBL	A0A2P5FRE8	2e-94	A0A2P5FRE8_TREOI; NAC domain containing protein
STRING	VIT_08s0007g07640.t01	5e-95	(Vitis vinifera)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]