PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11246_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HB-PHD

Protein Properties

Length: 781aa MW: 86495.1 Da PI: 4.9585

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11246_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.7	7.2e-12	609	656	9	56
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++L e F++n+yp+++ ++ LAk+lgL +qV WF N R + cra_locus_11246_iso_2_len_2825_ver_3 609 EAVVQRLVESFKENQYPKQDVKQSLAKELGLRVQQVGKWFENARWSFR 656 567899**************************************8766 PP
2	PHD	38.1	3.6e-13	241	296	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ + e++++lCdg C++ fH+ Cl+++l +e++p + wlC+ C++k cra_locus_11246_iso_2_len_2825_ver_3 241 FCAKCGSkdLTIENDIILCDGaCERGFHQFCLDPPLLKEDIPPDdeGWLCPGCDCK 296 699*955445****66***************99999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	6.87E-14	231	299	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	4.8E-13	237	296	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.994	239	296	IPR019787	Zinc finger, PHD-finger
Pfam	PF00628	1.3E-10	241	296	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	1.7E-9	241	294	IPR001965	Zinc finger, PHD-type
CDD	cd15504	1.46E-26	241	293	No hit	No description
PROSITE pattern	PS01359	0	242	293	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	7.8E-13	586	652	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.843	598	658	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-11	600	663	IPR009057	Homeodomain-like
SMART	SM00389	3.6E-8	600	662	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-9	608	656	IPR001356	Homeobox domain
CDD	cd00086	1.75E-8	612	659	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence Send to blast
XEHSNGEQIV ISNKDPISNS IPGDFRLPHE NGAAICAPEN MGSATCAPEN MGSATCDAHE 60 NHLDLQHSEP AEKDATNVAS ESVPHEGTSL PSRKQISSLL PPVSNRVLRS RSQEKPKASE 120 SKAVEVENSA NEGRKSKQRK GRMKKIPVNE FSRIRTHLRY LLHRVKYERN LIDAYSCEGW 180 KGQSLEKLKP EKELQRARSQ IFRYKLKIRD LFQQLDRSLT EGRFPESLFD SEGQIDSEDI 240 FCAKCGSKDL TIENDIILCD GACERGFHQF CLDPPLLKED IPPDDEGWLC PGCDCKLDCV 300 GMLNDFQEST LSVTDNWEKV FPEEAAAAAS GKTMDEGTGL PSDDSEDDDY NPDDPGLDHE 360 VSRGESTSDG SDYFSASDDI VPPLDNKQIF SPPSDDSEDD EYDPDAPDDD QQEKEESSSS 420 DFTSDSEDLG AILEDGESPN KDEGHFPSVS EDSKPNAVAS GEKLKAGKRK GRSLNDELSY 480 LTESNTEAVS GKRRGERLDY KKLHDXYRNA TSDSSDEDYT ETAGAKRRKS NAGKAIRICT 540 NKIQDRNDRT DTMDGNQNHK ENDHSVEGKS HKKLKVEGSN SISSESQKST SEVGSSGKDA 600 AKQYKRLGEA VVQRLVESFK ENQYPKQDVK QSLAKELGLR VQQVGKWFEN ARWSFRHSSR 660 MESKMVAAAS TNGSSLRTRV HVMSLAAKQS PVLPSPSDSG MENLISSQVR PGNEECQITD 720 AGEGKSVESE ASGEKSTRKR KVDNQGSGAG NCMKQDQHDD TPKSQGVRQR DRIQRRGRKS 780 S

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence Send to blast

XEHSNGEQIV ISNKDPISNS IPGDFRLPHE NGAAICAPEN MGSATCAPEN MGSATCDAHE  60
NHLDLQHSEP AEKDATNVAS ESVPHEGTSL PSRKQISSLL PPVSNRVLRS RSQEKPKASE  120
SKAVEVENSA NEGRKSKQRK GRMKKIPVNE FSRIRTHLRY LLHRVKYERN LIDAYSCEGW  180
KGQSLEKLKP EKELQRARSQ IFRYKLKIRD LFQQLDRSLT EGRFPESLFD SEGQIDSEDI  240
FCAKCGSKDL TIENDIILCD GACERGFHQF CLDPPLLKED IPPDDEGWLC PGCDCKLDCV  300
GMLNDFQEST LSVTDNWEKV FPEEAAAAAS GKTMDEGTGL PSDDSEDDDY NPDDPGLDHE  360
VSRGESTSDG SDYFSASDDI VPPLDNKQIF SPPSDDSEDD EYDPDAPDDD QQEKEESSSS  420
DFTSDSEDLG AILEDGESPN KDEGHFPSVS EDSKPNAVAS GEKLKAGKRK GRSLNDELSY  480
LTESNTEAVS GKRRGERLDY KKLHDXYRNA TSDSSDEDYT ETAGAKRRKS NAGKAIRICT  540
NKIQDRNDRT DTMDGNQNHK ENDHSVEGKS HKKLKVEGSN SISSESQKST SEVGSSGKDA  600
AKQYKRLGEA VVQRLVESFK ENQYPKQDVK QSLAKELGLR VQQVGKWFEN ARWSFRHSSR  660
MESKMVAAAS TNGSSLRTRV HVMSLAAKQS PVLPSPSDSG MENLISSQVR PGNEECQITD  720
AGEGKSVESE ASGEKSTRKR KVDNQGSGAG NCMKQDQHDD TPKSQGVRQR DRIQRRGRKS  780
S

Functional Description ? help Back to Top
Source	Description
UniProt	Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By pathogen infection.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106044.1	0.0	pathogenesis-related homeodomain protein isoform X1
Refseq	XP_027106045.1	0.0	pathogenesis-related homeodomain protein isoform X2
Refseq	XP_027106046.1	0.0	pathogenesis-related homeodomain protein isoform X2
Swissprot	P48786	1e-142	PRH_PETCR; Pathogenesis-related homeodomain protein
TrEMBL	A0A068TM20	0.0	A0A068TM20_COFCA; Uncharacterized protein
STRING	XP_009775281.1	0.0	(Nicotiana sylvestris)