PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11246_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HB-other
Protein Properties Length: 290aa    MW: 31990.1 Da    PI: 10.2821
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11246_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.61.8e-12118165956
                                           HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                              Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                           +  +++L e F++n+yp+++ ++ LAk+lgL  +qV  WF N R   +
  cra_locus_11246_iso_6_len_1442_ver_3 118 EAVVQRLVESFKENQYPKQDVKQSLAKELGLRVQQVGKWFENARWSFR 165
                                           667899**************************************8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-1395161IPR009057Homeodomain-like
PROSITE profilePS5007112.843107167IPR001356Homeobox domain
SMARTSM003893.6E-8109171IPR001356Homeobox domain
SuperFamilySSF466891.28E-11109172IPR009057Homeodomain-like
PfamPF000464.5E-10117165IPR001356Homeobox domain
CDDcd000862.89E-8121168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MVGLSVFSTX TVKEAYRNAT SDSSDEDYTE TAGAKRRKSN AGKAIRICTN KIQDRNDRTD  60
TMDGNQNHKE NDHSVEGKSH KKLKVEGSNS ISSESQKSTS EVGSSGKDAA KQYKRLGEAV  120
VQRLVESFKE NQYPKQDVKQ SLAKELGLRV QQVGKWFENA RWSFRHSSRM ESKMVAAAST  180
NGSSLRTRVH VMSLAAKQSP VLPSPSDSGM ENLISSQVRP GNEECQITDA GEGKSVESEA  240
SGEKSTRKRK VDNQGSGAGN CMKQDQHDDT PKSQGVRQRD RIQRRGRKSS