PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1125_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HB-other
Protein Properties Length: 173aa    MW: 20061.7 Da    PI: 9.9799
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1125_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.3e-2170125257
                                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                         rkRt  t+ q+e+Le+++e ++yp+++++e+LA+ +gLt++qV+ WF+ rR k+k+
  cra_locus_1125_iso_4_len_518_ver_3  70 RKRTVKTRAQVEALEKFYEDHKYPTEAMKEQLAEAIGLTDKQVSGWFCHRRLKDKR 125
                                         8*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-2352125IPR009057Homeodomain-like
SuperFamilySSF466894.19E-1953125IPR009057Homeodomain-like
PROSITE profilePS5007117.23266126IPR001356Homeobox domain
SMARTSM003898.8E-2168130IPR001356Homeobox domain
PfamPF000461.9E-1870125IPR001356Homeobox domain
CDDcd000862.73E-1770125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
VIRTKDKYEK RILAFSVGSV CXDVEFIRKQ VRKRQKKPTL QNPSENLRWI MDDSSEARSQ  60
EDKTPPEMSR KRTVKTRAQV EALEKFYEDH KYPTEAMKEQ LAEAIGLTDK QVSGWFCHRR  120
LKDKRLLNGE ANXXXXXMED KTVPAPFCRI VVVDISRILV AAPNKEVALP YGI