PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11294_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 137aa MW: 16058.2 Da PI: 10.5457

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11294_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.7	5.9e-09	13	63	13	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 NR +rsR RK+++i+eLe+ v+ L++ ++L+ ++ +l ++ +l e+ cra_locus_11294_iso_6_len_1781_ver_3 13 NRHPGQRSRVRKLQYIAELERTVDILQKFESDLAARVGSLFQQRLALSVEN 63 89999***********************************99998888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57959	6.64E-6	9	57	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.5E-7	13	75	No hit	No description
CDD	cd14703	3.43E-11	13	56	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MSIXELYRLT FMNRHPGQRS RVRKLQYIAE LERTVDILQK FESDLAARVG SLFQQRLALS 60 VENNKLKQKV VKLQQQKIIA DGQYQSLRKE VERLKTSLAY SSRKDKVSTN FRLSTTIEMA 120 NSEANWQNLD LENLHLN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027160417.1	1e-49	basic leucine zipper 61
Refseq	XP_027160419.1	1e-49	basic leucine zipper 61
Refseq	XP_027160420.1	1e-49	basic leucine zipper 61
Swissprot	Q5JMK6	2e-19	BZP06_ORYSJ; Basic leucine zipper 6
TrEMBL	A0A068TUK6	8e-48	A0A068TUK6_COFCA; Uncharacterized protein
STRING	Solyc11g006490.1.1	7e-46	(Solanum lycopersicum)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]