PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_113381_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

M-type_MADS

Protein Properties

Length: 325aa MW: 36925.1 Da PI: 5.0367

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_113381_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.7	8.1e-10	4	36	19	51
HHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 19 gilKKAeELSvLCdaevaviifsstgklyeyss 51 +lKKAeE+ v Cd++va++ fs+ g++ +s+ cra_locus_113381_iso_1_len_1203_ver_3 4 SLLKKAEEIKVSCDVDVALVAFSPAGRISQFSN 36 69**************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.25	1	38	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-11	4	62	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.9E-9	4	34	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
XRISLLKKAE EIKVSCDVDV ALVAFSPAGR ISQFSNKERM EDFLLRYTSL PAEKRLGHVK 60 DVKKKMEKLK KLDHIKNEDL RAHFLQKQIQ NLESQIKQKE MEVQIAEAFL QNFEVDPDQS 120 SLQQISWAEN NVLQAIETIK LGQKEKLARE NEGGNNFHPG GSISPVLPQQ LQMDTPNIIS 180 EEKLKEILDK GKAKVAGDGY ITTENNYHIL EASGRNRMGI SIQEPNETFN RQTFVPPPQI 240 NAEQYFAQQY PPLNYDHDFQ LWEQAQLNAS FESFYMGESS NSSIVQANNN FGHGNLYAIP 300 EYDENGNNGF NSKDDNMFPP PSSGV

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3785	12	19