PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11347_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 75aa MW: 8664.53 Da PI: 9.176

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11347_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.8	1.4e-06	59	74	5	20
--SGGGGTS--TTTTT CS zf-CCCH 5 lCrffartGtCkyGdr 20 C++f rtG C+yGd+ cra_locus_11347_iso_3_len_320_ver_3 59 VCNRFVRTGSCQYGDS 74 7*************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06220	1.9E-10	3	38	IPR013085	Zinc finger, U1-C type
SMART	SM00451	0.0033	3	38	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	4.76E-15	3	52	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
MAMGKYYCDY CDKEFKDTPG ARKRHLQGVY HQRAKALWYD SLRYGNQVPD PESIGKKGVC 60 NRFVRTGSCQ YGDSX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027108017.1	2e-42	zinc finger CCCH domain-containing protein 3 isoform X5
Swissprot	Q0JP11	9e-24	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A068V5T7	3e-37	A0A068V5T7_COFCA; Uncharacterized protein
STRING	Migut.B00859.1.p	2e-35	(Erythranthe guttata)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]