PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11362_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 359aa    MW: 37725.3 Da    PI: 8.7768
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11362_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-115075227
                                          -S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                          ++++C+++ +tG+Ck+G +CkF+H++
  cra_locus_11362_iso_2_len_2084_ver_3 50 GEKECSYYVKTGQCKFGVTCKFHHPQ 75
                                          6789********************97 PP
2zf-CCCH39.21.2e-12181207127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           y++++C+++++tG Ck+G++C+++H+p
  cra_locus_11362_iso_2_len_2084_ver_3 181 YGQPECQYYMKTGDCKFGASCRYHHPP 207
                                           899**********************97 PP
3zf-CCCH375.6e-12230253427
                                           ---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                           ++C+++a++G Ck+G++CkF+H++
  cra_locus_11362_iso_2_len_2084_ver_3 230 PICSHYAQNGVCKFGPSCKFNHPM 253
                                           89********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.4E-54875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0514876IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-95075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-65176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-45474IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-6180207IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-10181207IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6181207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676181208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4186207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925226254IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6226253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6228256IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9230253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5231251IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
XIYGYPMRPV STFCPFQFPL AFFVFFLNIY FDYMLEALAR LXLKKFLSQG EKECSYYVKT  60
GQCKFGVTCK FHHPQPAGVQ VQAPAPGPGP LPAPAAVPAP AIYPTVQSPS VQSSQQYGVV  120
AGNWPVARPT LLPGSYIPGT FGPVLLPPGM VPVPGWTSYP APVSPAASSS TQPTVGAGPV  180
YGQPECQYYM KTGDCKFGAS CRYHHPPEWS ADKTSFVLTP MGLPLRPDAP ICSHYAQNGV  240
CKFGPSCKFN HPMGTLSYSP SASSLADMPV APYPVGSSMG TLAPSSSSSD LRPELMSGSS  300
KDAFSGRMSS MSSSSGPVGS LFSKSGTVPR SSSQQPGQGS STSSGSSSTA HGSEVRTSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267356.11e-141PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ5NAW23e-90C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A314KSJ41e-139A0A314KSJ4_NICAT; Zinc finger ccch domain-containing protein 34
STRINGSolyc01g067550.2.11e-136(Solanum lycopersicum)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]