PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11362_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 328aa    MW: 35737.6 Da    PI: 8.8306
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11362_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.6e-115075227
                                          -S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                          ++++C+++ +tG+Ck+G +CkF+H++
  cra_locus_11362_iso_4_len_1153_ver_3 50 GEKECSYYVKTGQCKFGVTCKFHHPQ 75
                                          6789********************97 PP
2zf-CCCH39.68.9e-13220246127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           +++++C+++++tG Ck+G++C+++H+p
  cra_locus_11362_iso_4_len_1153_ver_3 220 PGQPECQYYMKTGDCKFGASCRYHHPP 246
                                           5789*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.4E-54875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0514876IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-95075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-65176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-45474IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145219247IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6219246IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-10221246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5223246IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4225246IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
XIYGYPMRPV STFCPFQFPL AFFVFFLNIY FDYMLEALCX TKLKKFLSQG EKECSYYVKT  60
GQCKFGVTCK FHHPQPAGVQ VQAPAPGPGP LPAPAAVPAP AIYPTVQSPS VQSSQQYGVV  120
AGNWPVARPT LLPGSYIPGT FGPVLLPPGM VPVPGWTSYP APVSPAASSS TQPTVGAGPV  180
YGITQLSPSA PAYTGQYLPV SSSAGPSGSS HKENVFPERP GQPECQYYMK TGDCKFGASC  240
RYHHPPEWSA DKTSFVLTPM GLPLRPXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXVK VHPVSLSV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267356.11e-110PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
TrEMBLA0A4D8Y1771e-107A0A4D8Y177_SALSN; Uncharacterized protein
STRINGPGSC0003DMT4000583231e-104(Solanum tuberosum)