PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11431_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 199aa    MW: 23271.6 Da    PI: 9.3728
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11431_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.25.9e-3171351128
                                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                                          +p GfrF+Ptdeel+ +yLk+kv + ++++ ++i+e+++++++P ++p      +++ yfF++r+    t   +
  cra_locus_11431_iso_1_len_999_ver_3   7 VPIGFRFRPTDEELIIHYLKRKVLSLPFPA-SIIPEFHVFQTNPLHFPG---DPRENRYFFCNRKILPITTIVS 76 
                                          589***************************.89***************3...345678******9998888888 PP

                                  NAM  75 nratksgyWkatgkdkevlsk..kgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                                           r   sgyWk tg++++++s   ++++vg+k++L+fy    k+++ +g  +dWvm+ey l
  cra_locus_11431_iso_1_len_999_ver_3  77 VRD-GSGYWKLTGRQRKIISPaaNNRVVGTKRSLAFYhyqgKQKHGHGLMSDWVMDEYCL 135
                                          886.89*************99888999**********8844445556669********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-375159IPR003441NAC domain
PROSITE profilePS5100535.5317159IPR003441NAC domain
PfamPF023651.3E-208135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDSIIRVPIG FRFRPTDEEL IIHYLKRKVL SLPFPASIIP EFHVFQTNPL HFPGDPRENR  60
YFFCNRKILP ITTIVSVRDG SGYWKLTGRQ RKIISPAANN RVVGTKRSLA FYHYQGKQKH  120
GHGLMSDWVM DEYCLLAPDE QQQNVLQIGD WFVYCIRRKK RKTKNQYSSR KDESSSLCLS  180
EIIDVSCNNE LDQEANSEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-18516018169NAC domain-containing protein 19
3swm_B2e-18516018169NAC domain-containing protein 19
3swm_C2e-18516018169NAC domain-containing protein 19
3swm_D2e-18516018169NAC domain-containing protein 19
3swp_A2e-18516018169NAC domain-containing protein 19
3swp_B2e-18516018169NAC domain-containing protein 19
3swp_C2e-18516018169NAC domain-containing protein 19
3swp_D2e-18516018169NAC domain-containing protein 19
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132501318