PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11485_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

M-type_MADS

Protein Properties

Length: 225aa MW: 25708.2 Da PI: 4.2261

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11485_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35.4	1.3e-11	64	93	22	51
HHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeyss 51 KA+ELS+LCd+ v+ +i s++g+ ++++ cra_locus_11485_iso_1_len_842_ver_3 64 RKAKELSILCDIPVCAVITSPNGETETWPT 93 5***************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00319	1.6E-7	64	91	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-9	64	108	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
RPGGIDFYFG KNFKESDQIN SSRKGEERGD NKIFAFCVEL CVIIWSXXXX XXXXXXXXXX 60 XXXRKAKELS ILCDIPVCAV ITSPNGETET WPTSLSELKP IFQMYREKIQ FFDRQGYGDP 120 AEDNYGKGTD EIMLFDHDPA DENYDQETEE DDEDEIMEWL NDKILAVNDR IRVLKEIDVK 180 KLPWRSGSVT EFQSDCTCLS SSSAHSAQTN GAESISIGRE SHFSD

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3723	16	39