PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11485_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family M-type_MADS
Protein Properties Length: 179aa    MW: 20522.7 Da    PI: 4.4319
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11485_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.79.4e-16347751
                                         HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                          +r+ ++ k +++i  KA+ELS+LCd+ v+ +i s++g+  ++++
  cra_locus_11485_iso_2_len_876_ver_3  3 QRRSLSYRKGKETIKRKAKELSILCDIPVCAVITSPNGETETWPT 47
                                         69*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.409149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-13362IPR002100Transcription factor, MADS-box
PfamPF003194.8E-11345IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MRQRRSLSYR KGKETIKRKA KELSILCDIP VCAVITSPNG ETETWPTSLS ELKPIFQMYR  60
EKIQFFDRQG YGDPAEDNYG KGTDEIMLFD HDPADENYDQ ETEEDDEDEI MEWLNDKILA  120
VNDRIRVLKE IDVKKLPWRS GSVTEFQSDC TCLSSSSAHS AQTNGAESIS IGRESHFSD