PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11535_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 277aa    MW: 31269.2 Da    PI: 4.5712
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11535_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1853101355
                                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  cra_locus_11535_iso_2_len_981_ver_3  53 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDREARKIRG 101
                                          9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-3252110IPR001471AP2/ERF domain
SMARTSM003802.9E-3852115IPR001471AP2/ERF domain
PROSITE profilePS5103223.80252109IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2252110IPR016177DNA-binding domain
CDDcd000181.49E-3253110No hitNo description
PRINTSPR003677.6E-125364IPR001471AP2/ERF domain
PfamPF008471.6E-1153101IPR001471AP2/ERF domain
PRINTSPR003677.6E-127591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
NDPNPLKQVV NMLPSPSFCS FFXSDLNFGC LVFIQTGGEQ VRKSAKRQRK NLYRGIRQRP  60
WGKWAAEIRD PRKGVRVWLG TFSTAEEAAR AYDREARKIR GKKAKVNFPN EEMEFESTYH  120
PPQQFYPNFN ANSSGVPYNT SNGCFYANLN QLEAAAGNGA YNYSTVGFQT PSDELSGSAS  180
DNEGIYSRLP VKEEEEEEEE QAANPRENKP IEATEREDEV EKLKEELMAY ENYMKFYQIP  240
YLDGQSTTAA AASNPAQETA IGVGPIELWS FDEESGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-21531111574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022757939.11e-74ethylene-responsive transcription factor ERF071-like
TrEMBLA0A059VQH51e-175A0A059VQH5_CATRO; Ethylene-responsive transcription
STRINGXP_008454315.15e-72(Cucumis melo)