PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11598_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 205aa MW: 23164.6 Da PI: 6.6226

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11598_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	54.4	2.8e-17	45	75	1	31
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPkt 31 kprl+Wtp+LHerF+eav+qLGG++kAtPkt cra_locus_11598_iso_1_len_1025_ver_3 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKT 75 79****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-13	43	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.73E-5	44	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-11	45	75	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MYPHHHQGKN IHASSRMSIP PERHLFLQGG NGPGDSGLVL STDAKPRLKW TPDLHERFIE 60 AVNQLGGADK ATPKTSAMSP AYXQTEQRWC EDLNDKRRFL LSMNEEAEKE CAMEKSCSNL 120 SMSIGLQGGW NTNIYSEKGI TETNRDTKFF DQPCSRHDAV PTVKQRSSQE YKMPFFAPKL 180 DLNTDDETDA ASKCKQFDLN GFSWS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023929228.1	2e-43	myb-related protein 2-like isoform X1
Refseq	XP_023929229.1	2e-43	myb-related protein 2-like isoform X1
Refseq	XP_023929230.1	1e-43	myb-related protein 2-like isoform X2
Refseq	XP_023929231.1	1e-43	myb-related protein 2-like isoform X2
TrEMBL	A0A2K1Y1Q1	2e-41	A0A2K1Y1Q1_POPTR; Uncharacterized protein
STRING	POPTR_0013s05670.1	3e-42	(Populus trichocarpa)