PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11626_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 369aa    MW: 40887.7 Da    PI: 7.9282
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11626_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.7e-0992117127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           ykt+lC  f++ G Ck G+ C+FaHg+
  cra_locus_11626_iso_1_len_1549_ver_3  92 YKTRLCAKFFE-GNCKNGEHCTFAHGQ 117
                                           9**********.*************97 PP
2zf-CCCH25.52.3e-08160183225
                                           -S---SGGGGTS--TTTTT-SS-S CS
                               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                                           k+++C+ f+ + +C+yG++C+F H
  cra_locus_11626_iso_1_len_1549_ver_3 160 KMKICKKFYNGEECPYGEKCNFLH 183
                                           7899******66************ PP
3zf-CCCH41.81.7e-13252278127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           +kt++C+ +  tG+C++G+rC+FaHg+
  cra_locus_11626_iso_1_len_1549_ver_3 252 WKTKICSKWEITGHCPFGERCHFAHGQ 278
                                           8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-1488124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-889122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.96291118IPR000571Zinc finger, CCCH-type
SMARTSM003560.004191117IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-792117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7157186IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042158185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061158186IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-6160183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-9160185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-17247282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-10250282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713251279IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-8251278IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10252278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSFPNNPPPP PHQPFPQRPF FDGGDVGGFW PQFPAGSQNP EFHVPFENGP PFKRSRNSEN  60
NPSKFSQFPP AFNPRLNSQS LPGGKGTSHI FYKTRLCAKF FEGNCKNGEH CTFAHGQQDL  120
REPPPNWQEL VRDKEKDGGG VGGGGCGSGN WNDDQRIIHK MKICKKFYNG EECPYGEKCN  180
FLHERPNPGF PNENMRFKTE VTRQRESAAI SIGTRGPAIE NKTDAAAADL QQENNKSMTS  240
NLDATKTKPV FWKTKICSKW EITGHCPFGE RCHFAHGQSE LQAATARAEA EVPVNSGPIQ  300
MNPAAVPATD SAPVEVPVVA PVNEGVDPKI SRWKLNRKVN NIYADWIYDD LYLPTPPKTP  360
KSVSGEAEA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340244.11e-122PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLM1CEA91e-121M1CEA9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000655851e-122(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434