PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11626_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 366aa    MW: 40615.4 Da    PI: 7.9282
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11626_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.7e-0992117127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           ykt+lC  f++ G Ck G+ C+FaHg+
  cra_locus_11626_iso_2_len_1540_ver_3  92 YKTRLCAKFFE-GNCKNGEHCTFAHGQ 117
                                           9**********.*************97 PP
2zf-CCCH25.52.3e-08160183225
                                           -S---SGGGGTS--TTTTT-SS-S CS
                               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                                           k+++C+ f+ + +C+yG++C+F H
  cra_locus_11626_iso_2_len_1540_ver_3 160 KMKICKKFYNGEECPYGEKCNFLH 183
                                           7899******66************ PP
3zf-CCCH39.97.1e-13252276125
                                           --S---SGGGGTS--TTTTT-SS-S CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                                           +kt++C+ +  tG+C++G+rC+FaH
  cra_locus_11626_iso_2_len_1540_ver_3 252 WKTKICSKWEITGHCPFGERCHFAH 276
                                           8************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-1488124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-889122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.96291118IPR000571Zinc finger, CCCH-type
SMARTSM003560.004191117IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-792117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7157186IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042158185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061158186IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-6160183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-9160185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-13247278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-9250279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.657251279IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-8251278IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10252276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSFPNNPPPP PHQPFPQRPF FDGGDVGGFW PQFPAGSQNP EFHVPFENGP PFKRSRNSEN  60
NPSKFSQFPP AFNPRLNSQS LPGGKGTSHI FYKTRLCAKF FEGNCKNGEH CTFAHGQQDL  120
REPPPNWQEL VRDKEKDGGG VGGGGCGSGN WNDDQRIIHK MKICKKFYNG EECPYGEKCN  180
FLHERPNPGF PNENMRFKTE VTRQRESAAI SIGTRGPAIE NKTDAAAADL QQENNKSMTS  240
NLDATKTKPV FWKTKICSKW EITGHCPFGE RCHFAHELQA ATARAEAEVP VNSGPIQMNP  300
AAVPATDSAP VEVPVVAPVN EGVDPKISRW KLNRKVNNIY ADWIYDDLYL PTPPKTPKSV  360
SGEAEA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340244.11e-118PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLM1CEA91e-116M1CEA9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000655851e-117(Solanum tuberosum)