PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11684_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 283aa MW: 30824.5 Da PI: 5.0543

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11684_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.3	8.8e-30	83	140	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + itY++eHnh+ cra_locus_11684_iso_1_len_1661_ver_3 83 DSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLDPTKLLITYSSEHNHS 140 99**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-30	74	142	IPR003657	WRKY domain
PROSITE profile	PS50811	31.571	76	142	IPR003657	WRKY domain
SuperFamily	SSF118290	9.68E-26	76	142	IPR003657	WRKY domain
SMART	SM00774	3.4E-35	81	141	IPR003657	WRKY domain
Pfam	PF03106	3.5E-25	83	139	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
KXWVFCSSSS SAAAAXXXXD DSTTSTDQEN NFNDSHLSGD EAYEVDDAPS PKKRKGAQKR 60 VISVAIGEGD GSRNRTEVYP PPDSWSWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE 120 RSRLDPTKLL ITYSSEHNHS LPTTTKHHHI TTPATTANVA TPAADSTSTS SSSKATNKSE 180 EFGVFANRPE IDSDNSSSFS EFAGELGWFS DVGSSSIVLE SSPMLVGPNW VDADVALMLP 240 IGEEDQSLFG DLGELPECSV VFRRAIVVDE KELVYSGFHF DGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-19	59	143	6	80	Disease resistance protein RRS1
5w3x_D	1e-19	59	143	6	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065103.1	1e-108	probable WRKY transcription factor 69
Swissprot	Q93WV5	2e-63	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A068V5W4	1e-103	A0A068V5W4_COFCA; Uncharacterized protein
STRING	XP_009593761.1	5e-93	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]