PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11684_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 185aa MW: 19849.7 Da PI: 4.4705

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11684_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	24.1	7.2e-08	14	42	31	59
T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 31 gCpvkkkversaedpkvveitYegeHnhe 59 + p++k+vers+ dp+ + itY++eHnh+ cra_locus_11684_iso_2_len_1211_ver_3 14 DXPARKQVERSRLDPTKLLITYSSEHNHS 42 5689************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-6	13	44	IPR003657	WRKY domain
PROSITE profile	PS50811	11.187	13	44	IPR003657	WRKY domain
Pfam	PF03106	1.4E-4	14	41	IPR003657	WRKY domain
SuperFamily	SSF118290	7.32E-5	15	44	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MGAGDIIGVA AQKDXPARKQ VERSRLDPTK LLITYSSEHN HSLPTTTKHH HITTPATTAN 60 VATPAADSTS TSSSSKATNK SEEFGVFANR PEIDSDNSSS FSEFAGELGW FSDVGSSSIV 120 LESSPMLVGP NWVDADVALM LPIGEEDQSL FGDLGELPEC SVVFRRAIVV DEKELVYSGF 180 HFDGK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065103.1	2e-52	probable WRKY transcription factor 69
TrEMBL	A0A068V5W4	1e-47	A0A068V5W4_COFCA; Uncharacterized protein
STRING	XP_009593761.1	3e-47	(Nicotiana tomentosiformis)