PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11684_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 106aa MW: 12046.1 Da PI: 7.8885

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11684_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	32.1	2.2e-10	87	106	3	22
-SS-EEEEEEE--TT-SS-E CS WRKY 3 DgynWrKYGqKevkgsefpr 22 D ++WrKYGqK++kgs++pr cra_locus_11684_iso_3_len_1068_ver_3 87 DSWSWRKYGQKPIKGSPYPR 106 99*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.8E-10	78	106	IPR003657	WRKY domain
PROSITE profile	PS50811	12.886	80	106	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-8	80	106	IPR003657	WRKY domain
Pfam	PF03106	3.4E-6	87	106	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MVKKSSGFFV HHHHQQQQXX XXEDDSTTST DQENNFNDSH LSGDEAYEVD DAPSPKKRKG 60 AQKRVISVAI GEGDGSRNRT EVYPPPDSWS WRKYGQKPIK GSPYPR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065103.1	4e-35	probable WRKY transcription factor 69
Swissprot	Q93WV5	1e-21	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A068V5W4	1e-33	A0A068V5W4_COFCA; Uncharacterized protein
TrEMBL	A0A411K8D7	1e-33	A0A411K8D7_COFCA; WRKY29 (Fragment)
STRING	Solyc07g055280.2.1	2e-26	(Solanum lycopersicum)
STRING	PGSC0003DMT400052637	2e-26	(Solanum tuberosum)

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]