PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11711_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 199aa MW: 21371.5 Da PI: 7.5105

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11711_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.5	8.9e-07	161	187	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + cra_locus_11711_iso_1_len_1363_ver_3 161 SHSLAERARREKISERMKILQDLVPGC 187 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.53E-5	155	189	No hit	No description
SuperFamily	SSF47459	5.37E-8	155	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-8	157	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.604	157	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-4	161	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MDPPIINEAS FSAANPSSYS LAELWPFPIS GAGTGNGDLG GLGLRMGSFG GFRGDATTVS 60 VDESTVTEQS ASHGASAGRK RKDFNSEDES SKPVSTSSAN DLNNSCAKRM KESRAKEENG 120 DSKVEGETSS ETGKKANEQG KPEPPKDYIH VRARRGQATD SHSLAERARR EKISERMKIL 180 QDLVPGCNKV LYAFFPISR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016563548.1	2e-81	PREDICTED: transcription factor bHLH79
Swissprot	Q9LV17	7e-53	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A1U8G4D0	5e-80	A0A1U8G4D0_CAPAN; transcription factor bHLH79
TrEMBL	A0A2G3AW72	5e-80	A0A2G3AW72_CAPCH; Transcription factor bHLH79
STRING	XP_006476705.1	3e-79	(Citrus sinensis)

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]