PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11823_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 370aa MW: 40461.1 Da PI: 7.8294

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11823_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.8	1.2e-33	26	80	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl cra_locus_11823_iso_1_len_1667_ver_3 26 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 80 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.347	23	83	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-32	23	81	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.72E-16	25	81	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	26	81	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	28	78	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-21	120	159	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010088	Biological Process	phloem development
GO:0010089	Biological Process	xylem development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MNTAHHERPS MCVQGDSGLV LTTDPKPRLR WTVELHERFV DAVTQLGGPD KATPKTIMRV 60 MGVKGLTLYH LKSHLQKFRL GKQPHKEFSD HPIKDASSLE LQRNTSASSS GMIGRSMNEM 120 QMEVQRRIHE QLEVQRHLQL RIEAQGKYMQ TILEKACQTL AGENLSSSSA AYNNINNKGL 180 IGDFNFPSLQ DLSIYGGGGG AADQQQQQLQ LHHEQQQSDH GFVECLAGGK KRPNPNPYGG 240 GGGGTSKSPL MMWSSADDLR LQELAGTAAA TSCLGGSSSS QDDHHHHQIQ IAPHLSLDHR 300 NNNNEHLDSV SSDINYDTKP NMLMAGSSDQ HNINAGEKNA GTKLERPSPR RAGSERQMVS 360 AGAGRNSPFG

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MNTAHHERPS MCVQGDSGLV LTTDPKPRLR WTVELHERFV DAVTQLGGPD KATPKTIMRV  60
MGVKGLTLYH LKSHLQKFRL GKQPHKEFSD HPIKDASSLE LQRNTSASSS GMIGRSMNEM  120
QMEVQRRIHE QLEVQRHLQL RIEAQGKYMQ TILEKACQTL AGENLSSSSA AYNNINNKGL  180
IGDFNFPSLQ DLSIYGGGGG AADQQQQQLQ LHHEQQQSDH GFVECLAGGK KRPNPNPYGG  240
GGGGTSKSPL MMWSSADDLR LQELAGTAAA TSCLGGSSSS QDDHHHHQIQ IAPHLSLDHR  300
NNNNEHLDSV SSDINYDTKP NMLMAGSSDQ HNINAGEKNA GTKLERPSPR RAGSERQMVS  360
AGAGRNSPFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063492.1	1e-138	myb family transcription factor APL-like isoform X4
Swissprot	Q9SAK5	1e-112	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A2G9G9Z5	1e-134	A0A2G9G9Z5_9LAMI; Uncharacterized protein
STRING	XP_004293816.1	1e-130	(Fragaria vesca)
STRING	XP_010092480.1	1e-130	(Morus notabilis)

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]