PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_118457_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 77aa MW: 8925.17 Da PI: 8.8399

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_118457_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36	1.3e-11	20	71	42	91
TS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 42 sgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 + ++W k+ + + k+++ + ++GWkeFv +n +k+gD +vF+l++ + f+ cra_locus_118457_iso_1_len_281_ver_3 20 REETWIAKCVIykEPKRKARLRGDGWKEFVMDNSIKAGDACVFELVEINAFK 71 558999999663444444467779********************98756664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.391	1	77	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-9	19	71	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.2E-11	19	75	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.38E-10	22	76	No hit	No description
SuperFamily	SSF101936	8.04E-11	22	75	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
XYLNFQSKKY CNISLGVEGR EETWIAKCVI YKEPKRKARL RGDGWKEFVM DNSIKAGDAC 60 VFELVEINAF KIIIYPA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA759	18	93