PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11850_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 235aa    MW: 26668.8 Da    PI: 9.1968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11850_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.7e-12105146351
                                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                                            +GV++  k+ +W A I++      +k+++lg+ g++eeAa+++++a+ 
  cra_locus_11850_iso_1_len_1086_ver_3 105 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSEEEAARLYDRAAF 146
                                           79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-4104161IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-8105149IPR016177DNA-binding domain
PfamPF008477.6E-6105147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-6107151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVSIRRRKLL GLCTGRNSFL NPLPKFSENG NNQENHMQNT KLVSVHPMPS GDIDQKKEMS  60
SLLDEPFNAS GSAPSGEQHI QPFPEVKRRK RHRRKHSENQ ETCTMRGVYF KNMKWQAAIK  120
VDKKQIHLGT VGSEEEAARL YDRAAFMCGR EPNFELSEEE KQELSKFKWD EFLAITRSAI  180
NNKKHRRNGV GSRRKSESST IKNEWESEQG GGNGLSAAED GAEAEAEPEP DTPRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027093128.11e-100ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_027093136.11e-100ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A068U6G52e-98A0A068U6G5_COFCA; Uncharacterized protein
STRINGXP_010242670.17e-91(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62462433