PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12014_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family BBR-BPC
Protein Properties Length: 289aa    MW: 32440.8 Da    PI: 9.9607
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12014_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind328.42e-100628913301
                             GAGA_bind  13 yyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllall 85 
                                           +y+ ++++   +++++ +++aerda+i+er+ alsek++a+a+rd a +qrd+a+aer++al erdn+++al+
  cra_locus_12014_iso_2_len_1205_ver_3   6 QYQMKEQIF--MNTKISALLAERDAAIEERDRALSEKREAIADRDLAIQQRDTAIAERDNALRERDNAIAALQ 76 
                                           444443444..799999******************************************************** PP

                             GAGA_bind  86 lvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakk 158
                                           ++e +++ al  g+++ +gtk i+++   + p+  +s++ +re +++ea+pi+   +e  +++  k r + kk
  cra_locus_12014_iso_2_len_1205_ver_3  77 FQESTMSAAL--GSGSQRGTKRINHHSD-HYPRNMQSTQSMRELQIIEAFPITAISSEDAKSHLLK-RTKVKK 145
                                           *999876665..778889******9888.556666777789**********998777776666555.444455 PP

                             GAGA_bind 159 pkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGW 230
                                             ++k ++  kk +k  ++ +++ + + skae++ +dl  +n++++Dest+P+PvC+CtG+ rqCYkWGnGGW
  cra_locus_12014_iso_2_len_1205_ver_3 146 GISTKGTRSSKKAKKVGEDLNRHVTTDGSKAEWEAQDLsCINEINFDESTMPIPVCTCTGVARQCYKWGNGGW 218
                                           55555554444455555555555555669*********88********************************* PP

                             GAGA_bind 231 qSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                           qS+CCtt++SvyPLP+ +++r+aR++grKmS+++f +lL ++aa G+dls p+DLk++WAkHGtn+++ti+
  cra_locus_12014_iso_2_len_1205_ver_3 219 QSSCCTTSLSVYPLPQIPNKRHARMGGRKMSGSVFGRLLTRVAAAGHDLSIPLDLKNYWAKHGTNRYITIK 289
                                           **********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.3E-1181289IPR010409GAGA-binding transcriptional activator
PfamPF062175.5E-911289IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
WNMMPQYQMK EQIFMNTKIS ALLAERDAAI EERDRALSEK REAIADRDLA IQQRDTAIAE  60
RDNALRERDN AIAALQFQES TMSAALGSGS QRGTKRINHH SDHYPRNMQS TQSMRELQII  120
EAFPITAISS EDAKSHLLKR TKVKKGISTK GTRSSKKAKK VGEDLNRHVT TDGSKAEWEA  180
QDLSCINEIN FDESTMPIPV CTCTGVARQC YKWGNGGWQS SCCTTSLSVY PLPQIPNKRH  240
ARMGGRKMSG SVFGRLLTRV AAAGHDLSIP LDLKNYWAKH GTNRYITIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144LLKRTKVKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027160005.11e-160protein BASIC PENTACYSTEINE4-like
RefseqXP_027160006.11e-160protein BASIC PENTACYSTEINE4-like
RefseqXP_027160008.11e-160protein BASIC PENTACYSTEINE4-like
RefseqXP_027160009.11e-160protein BASIC PENTACYSTEINE4-like
RefseqXP_027160010.11e-160protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-109BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A068TKY01e-159A0A068TKY0_COFCA; Uncharacterized protein
STRINGXP_009804621.11e-147(Nicotiana sylvestris)