PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12014_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family BBR-BPC
Protein Properties Length: 396aa    MW: 44511.7 Da    PI: 9.207
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12014_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind309.98.5e-95833861293
                             GAGA_bind   1 mdddgsre..rnkg.yye.........paaslken..lglqlmssiaerdakirernlalsekkaavaerdma 59 
                                           mdd g+re  r++  yy+         p+ ++ke+  +++++ +++aerda+i+er+ alsek++a+a+rd a
  cra_locus_12014_iso_6_len_1317_ver_3  83 MDDGGHREsrRQRMdYYKggqspwnmmPQYQMKEQifMNTKISALLAERDAAIEERDRALSEKREAIADRDLA 155
                                           9*****999777778*********9997778887633788999999*************************** PP

                             GAGA_bind  60 flqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeekl 132
                                            +qrd+a+aer++al erdn+++al+++e +++ al  g+++ +gtk i+++   + p+  +s++ +re +++
  cra_locus_12014_iso_6_len_1317_ver_3 156 IQQRDTAIAERDNALRERDNAIAALQFQESTMSAAL--GSGSQRGTKRINHHSD-HYPRNMQSTQSMRELQII 225
                                           ***************************999876665..778889******9888.556666777789****** PP

                             GAGA_bind 133 ealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslD 204
                                           ea+pi+   +e  +++  k r + kk  ++k ++  kk +k  ++ +++ + + skae++ +dl  +n++++D
  cra_locus_12014_iso_6_len_1317_ver_3 226 EAFPITAISSEDAKSHLLK-RTKVKKGISTKGTRSSKKAKKVGEDLNRHVTTDGSKAEWEAQDLsCINEINFD 297
                                           ****998777776666555.44445555555554444455555555555555669*********88******* PP

                             GAGA_bind 205 estlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGy 277
                                           est+P+PvC+CtG+ rqCYkWGnGGWqS+CCtt++SvyPLP+ +++r+aR++grKmS+++f +lL ++aa G+
  cra_locus_12014_iso_6_len_1317_ver_3 298 ESTMPIPVCTCTGVARQCYKWGNGGWQSSCCTTSLSVYPLPQIPNKRHARMGGRKMSGSVFGRLLTRVAAAGH 370
                                           ************************************************************************* PP

                             GAGA_bind 278 dlsnpvDLkdhWAkHG 293
                                           dls p+DLk++WAkH 
  cra_locus_12014_iso_6_len_1317_ver_3 371 DLSIPLDLKNYWAKHA 386
                                           ***************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.2E-8583386IPR010409GAGA-binding transcriptional activator
SMARTSM012263.1E-11883385IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
XSFSPSPANR SQFLSDAVPV AXLIKLKLSC PHSPSPFIIS PFSYSQRRAD FTCSSCTVDP  60
RSKDLVAYIT VFYLEEHLQC VYMDDGGHRE SRRQRMDYYK GGQSPWNMMP QYQMKEQIFM  120
NTKISALLAE RDAAIEERDR ALSEKREAIA DRDLAIQQRD TAIAERDNAL RERDNAIAAL  180
QFQESTMSAA LGSGSQRGTK RINHHSDHYP RNMQSTQSMR ELQIIEAFPI TAISSEDAKS  240
HLLKRTKVKK GISTKGTRSS KKAKKVGEDL NRHVTTDGSK AEWEAQDLSC INEINFDEST  300
MPIPVCTCTG VARQCYKWGN GGWQSSCCTT SLSVYPLPQI PNKRHARMGG RKMSGSVFGR  360
LLTRVAAAGH DLSIPLDLKN YWAKHAVGFX FWASQD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241249LLKRTKVKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027160005.11e-167protein BASIC PENTACYSTEINE4-like
RefseqXP_027160006.11e-167protein BASIC PENTACYSTEINE4-like
RefseqXP_027160008.11e-167protein BASIC PENTACYSTEINE4-like
RefseqXP_027160009.11e-167protein BASIC PENTACYSTEINE4-like
RefseqXP_027160010.11e-167protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-108BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A068TKY01e-166A0A068TKY0_COFCA; Uncharacterized protein
STRINGXP_009804621.11e-151(Nicotiana sylvestris)