PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12014_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family BBR-BPC
Protein Properties Length: 312aa    MW: 35149.8 Da    PI: 9.9627
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12014_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind335.41.5e-10213121301
                             GAGA_bind   1 mdddgsre..rnkg.yye.........paaslken..lglqlmssiaerdakirernlalsekkaavaerdma 59 
                                           mdd g+re  r++  yy+         p+ ++ke+  +++++ +++aerda+i+er+ alsek++a+a+rd a
  cra_locus_12014_iso_7_len_1609_ver_3   1 MDDGGHREsrRQRMdYYKggqspwnmmPQYQMKEQifMNTKISALLAERDAAIEERDRALSEKREAIADRDLA 73 
                                           9*****999777778*********9997778887633788999999*************************** PP

                             GAGA_bind  60 flqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeekl 132
                                            +qrd+a+aer++al erdn+++al+++e +++ al  g+++ +gtk i+++   + p+  +s++ +re +++
  cra_locus_12014_iso_7_len_1609_ver_3  74 IQQRDTAIAERDNALRERDNAIAALQFQESTMSAAL--GSGSQRGTKRINHHSD-HYPRNMQSTQSMRELQII 143
                                           ***************************999876665..778889******9888.556666777789****** PP

                             GAGA_bind 133 ealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslD 204
                                           ea+pi+   +e  +++  k r + kk  ++k ++  kk +k  ++ +++ + + skae++ +dl  +n++++D
  cra_locus_12014_iso_7_len_1609_ver_3 144 EAFPITAISSEDAKSHLLK-RTKVKKGISTKGTRSSKKAKKVGEDLNRHVTTDGSKAEWEAQDLsCINEINFD 215
                                           ****998777776666555.44445555555554444455555555555555669*********88******* PP

                             GAGA_bind 205 estlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGy 277
                                           est+P+PvC+CtG+ rqCYkWGnGGWqS+CCtt++SvyPLP+ +++r+aR++grKmS+++f +lL ++aa G+
  cra_locus_12014_iso_7_len_1609_ver_3 216 ESTMPIPVCTCTGVARQCYKWGNGGWQSSCCTTSLSVYPLPQIPNKRHARMGGRKMSGSVFGRLLTRVAAAGH 288
                                           ************************************************************************* PP

                             GAGA_bind 278 dlsnpvDLkdhWAkHGtnkfvtir 301
                                           dls p+DLk++WAkHGtn+++ti+
  cra_locus_12014_iso_7_len_1609_ver_3 289 DLSIPLDLKNYWAKHGTNRYITIK 312
                                           ***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012265.4E-1331312IPR010409GAGA-binding transcriptional activator
PfamPF062172.1E-931312IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDDGGHRESR RQRMDYYKGG QSPWNMMPQY QMKEQIFMNT KISALLAERD AAIEERDRAL  60
SEKREAIADR DLAIQQRDTA IAERDNALRE RDNAIAALQF QESTMSAALG SGSQRGTKRI  120
NHHSDHYPRN MQSTQSMREL QIIEAFPITA ISSEDAKSHL LKRTKVKKGI STKGTRSSKK  180
AKKVGEDLNR HVTTDGSKAE WEAQDLSCIN EINFDESTMP IPVCTCTGVA RQCYKWGNGG  240
WQSSCCTTSL SVYPLPQIPN KRHARMGGRK MSGSVFGRLL TRVAAAGHDL SIPLDLKNYW  300
AKHGTNRYIT IK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159167LLKRTKVKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027160005.11e-175protein BASIC PENTACYSTEINE4-like
RefseqXP_027160006.11e-175protein BASIC PENTACYSTEINE4-like
RefseqXP_027160008.11e-175protein BASIC PENTACYSTEINE4-like
RefseqXP_027160009.11e-175protein BASIC PENTACYSTEINE4-like
RefseqXP_027160010.11e-175protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-117BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A068TKY01e-175A0A068TKY0_COFCA; Uncharacterized protein
STRINGXP_009804621.11e-161(Nicotiana sylvestris)