PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12026_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 319aa MW: 36843.9 Da PI: 6.9267

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12026_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.1	3.6e-49	7	162	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........................ 49 lppGfrFhPtdeelv +yL++k++++++ + +i+e+d+yk++PwdLp cra_locus_12026_iso_5_len_4670_ver_3 7 LPPGFRFHPTDEELVIHYLCRKCASQPIAV-PIIAEIDLYKYNPWDLPGnflsfyyeiifixlnewlkfarnd 78 79************************99.88***********5589***********999999 PP NAM 50 .......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115 ++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + + +g+kk Lvfy g+apk cra_locus_12026_iso_5_len_4670_ver_3 79 elmiilgMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGN--PKPMGIKKALVFYAGKAPK 149 88877763334899********************************98..789************ PP NAM 116 gektdWvmheyrl 128 gekt+W+mheyrl cra_locus_12026_iso_5_len_4670_ver_3 150 GEKTNWIMHEYRL 162 *********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-20	3	56	IPR003441	NAC domain
PROSITE profile	PS51005	56.92	7	189	IPR003441	NAC domain
Pfam	PF02365	8.9E-27	8	162	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-37	83	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009611	Biological Process	response to wounding
GO:0009788	Biological Process	negative regulation of abscisic acid-activated signaling pathway
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MAAELQLPPG FRFHPTDEEL VIHYLCRKCA SQPIAVPIIA EIDLYKYNPW DLPGNFLSFY 60 YEIIFIXLNE WLKFARNDEL MIILGMALYG EKEWYFFSPR DRKYPNGSRP NRAAGSGYWK 120 ATGADKPIGN PKPMGIKKAL VFYAGKAPKG EKTNWIMHEY RLADVDRSAR KRNNSLRLDD 180 WVLCRIYNKK GTIDKQQMMG IRKAASQVIE EEDKKPEILK SVPETTPVVY SDFMYLDPSD 240 SVPKLHTNSS SSEQVVSPEF SQNTCEVQSE PKLNDWEKST SALDFPFSYD GNVLMNTQFP 300 SNYQMSPLQD MFMFLQKPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-74	3	195	11	174	Stress-induced transcription factor NAC1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00121	DAP	Transfer from AT1G01720	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027148352.1	1e-165	NAC domain-containing protein 2-like
Swissprot	Q39013	1e-133	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A068UR72	1e-164	A0A068UR72_COFCA; Uncharacterized protein
STRING	XP_009759475.1	1e-153	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1239	24	81

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]