PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12077_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 204aa MW: 22955 Da PI: 9.5469

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12077_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2.1e-11	130	175	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el+P+ +k s a++L +Av++Ik Lq cra_locus_12077_iso_3_len_1317_ver_3 130 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVQHIKGLQ 175 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.999	124	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.18E-14	127	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.72E-9	128	179	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.8E-14	129	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-12	130	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.4E-9	130	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
RGHAITRLNS QLSFTRQEPL SQISEENENG LSRETEAKKS STHSYATTSY GVGPWEDANS 60 LMFSVGPSKR AKNINSEIIN DLNSMETQFQ FSMPQTVIEM STMDKLLNIP QDSVPCKIRA 120 KRGFATHPRS IAERERRTRI SGKLKKLQEL VPNMDKQTSY ADMLDLAVQH IKGLQNHVQK 180 LNKELENCTC GCRKPRNCGG EGKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027117036.1	1e-111	transcription factor bHLH128-like isoform X1
Swissprot	Q8H102	3e-66	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A068UP76	1e-109	A0A068UP76_COFCA; Uncharacterized protein
STRING	XP_009803686.1	8e-97	(Nicotiana sylvestris)

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]