PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12077_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 366aa    MW: 39736.4 Da    PI: 9.441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12077_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.2e-11292337655
                                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                           +++Er RR ri  ++ +L+el+P+     +k  s a++L +Av++Ik Lq
  cra_locus_12077_iso_5_len_1663_ver_3 292 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVQHIKGLQ 337
                                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.999286336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-14289351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-10290341No hitNo description
Gene3DG3DSA:4.10.280.103.1E-13291350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-8292337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MASGGGGTIN SPALMRYGSA PSSLLSTAVD SVIGSTREFS ALGSTHHHRQ PQNLNMGPNP  60
TPAVRFFPIE TSSFAAESNC KVPNNTSTDP HKKGPDINNN NNNSTIGLQR SYGLKQDAAI  120
SGGGVGMVSF TPLVRHSSSP AGFLNQLAHA STSNDDNGFS ITRGHAITRL NSQLSFTRQE  180
PLSQISEENE NGLSRETEAK KSSTHSYATT SYGVGPWEDA NSLMFSVGPS KRAKNINSEI  240
INDLNSMETQ FQFSMPQTVI EMSTMDKLLN IPQDSVPCKI RAKRGFATHP RSIAERERRT  300
RISGKLKKLQ ELVPNMDKQT SYADMLDLAV QHIKGLQNHV QKLNKELENC TCGCRKPRNC  360
GGEGKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027117036.11e-146transcription factor bHLH128-like isoform X1
TrEMBLA0A068UP761e-144A0A068UP76_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000167931e-117(Solanum tuberosum)