PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12119_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 139aa MW: 15148.3 Da PI: 8.6661

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12119_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	64.2	2.1e-20	39	85	3	49
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 ++++++++sk+Fslp+ +AA +Lgvc++vLK+ C +G+ RWP+Rki cra_locus_12119_iso_1_len_1350_ver_3 39 SSLTFDQVSKFFSLPLSEAADSLGVCPSVLKKVCYDNGLVRWPYRKI 85 689*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.789	24	108	IPR003035	RWP-RK domain
Pfam	PF02042	9.8E-19	40	85	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
SGHYGRGVIT GTMSTLQNPN PNQSPYPNSN PNIAPSSSSS LTFDQVSKFF SLPLSEAADS 60 LGVCPSVLKK VCYDNGLVRW PYRKILAGKS LEEIKEDAAR EKRKHVELPK ALGLVNDDLA 120 SLTVASPLKY IDNLYIVLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022849954.1	4e-40	protein NLP3-like
TrEMBL	A0A1S3WYW0	3e-36	A0A1S3WYW0_TOBAC; protein NLP2-like
TrEMBL	A0A1U7VV73	3e-36	A0A1U7VV73_NICSY; protein NLP2
STRING	XP_009766294.1	5e-37	(Nicotiana sylvestris)