PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12127_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 315aa MW: 35908.6 Da PI: 5.1047

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12127_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.1	1.5e-15	26	117	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikege 68 +W+++ + +L++a ++ +l+rg+l++++W+ev++ + + ++ +r+ +qCk++++ l+k+yk +k+ cra_locus_12127_iso_2_len_1241_ver_3 26 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQEVADGVnarhgHTKKTRRTDVQCKNRIDTLKKKYKIEKAKI 98 7***********************************99888888999*****************999 PP trihelix 69 kkrtsessstcpyfdqlea 87 + + + +s++p++++l+a cra_locus_12127_iso_2_len_1241_ver_3 99 AESNGNLTSSWPFYTRLDA 117 999888889*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.8E-26	24	118	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MGEIHESSAT QSQTPPTRPL PFREDCWSEE ATSTLVDAWG RRYLELNRGN LRQKDWQEVA 60 DGVNARHGHT KKTRRTDVQC KNRIDTLKKK YKIEKAKIAE SNGNLTSSWP FYTRLDALIG 120 PNVKNQSQKL MPLMNSSAQS QLSMPLPPMG IPLYKKPQLL LPPAVPLEPV VLPQKRQFSS 180 VGDSYFRKNY SAMAAAAAAA EEDVEEDEDG EAGSDEEEED DVEEKDGTAE EEGMRRLAKA 240 IERFGGIYER VENMKQRQMV ELEKQRMQFT KDLEVQRMQL FMDTQVQLEK LKQAKRSGSD 300 GIEIWIDLVA LSFQL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00413	DAP	Transfer from AT3G58630	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105528.1	1e-135	trihelix transcription factor ASIL2-like
TrEMBL	A0A068TLE8	1e-122	A0A068TLE8_COFCA; Uncharacterized protein
TrEMBL	A0A103Y6H4	1e-122	A0A103Y6H4_CYNCS; Uncharacterized protein
STRING	XP_009757835.1	1e-119	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70