PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1213_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 340aa    MW: 37307.8 Da    PI: 7.9232
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1213_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.4e-11555146
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                         +++WT+eE+  l+ +++++G g W+tI +          R+  ++k++w++
  cra_locus_1213_iso_1_len_1719_ver_3  5 KQKWTAEEEAALKAGIARYGVGKWSTILKDPEfsgvlRSRSNVDLKDKWRN 55
                                         79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.552163IPR017930Myb domain
SuperFamilySSF466891.35E-15291IPR009057Homeodomain-like
SMARTSM007174.1E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-14556IPR009057Homeodomain-like
PfamPF002491.9E-7555IPR001005SANT/Myb domain
CDDcd116607.77E-21657No hitNo description
SuperFamilySSF467852.29E-13117189IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.2E-12118183IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.0E-12120181IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150419.274120200IPR005818Linker histone H1/H5, domain H15
PfamPF005388.3E-9125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGI ARYGVGKWST ILKDPEFSGV LRSRSNVDLK DKWRNINVMV  60
NGLGSRQRGR PACKSIQLPP KPDENTMALE TVVENDSDVL NVKPLAAAAE RLPNATSKKP  120
ISRLDDLIME AIAKLKEPRG SSRAIIASYI EERYCVPPNF ERILATNLKL LTENQQLLKV  180
TNFHRWNTAE MLGLFFILEK NTSFVFSQGT LEIIISMLCS QVKHQYRIVT SPTSLRVRNK  240
PAPSLLDGVE KDSSSVERNG IKIITKAQVD AELEMMKSMS AEEAAAIAAQ AIAQAEAAIA  300
EAEAAAKEAE KAEAEAEASQ CFADATAAAL MEGFYRSVRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075217.18e-99single myb histone 6-like isoform X1
RefseqXP_027079170.18e-99single myb histone 6-like isoform X1
RefseqXP_027079171.18e-99single myb histone 6-like isoform X1
RefseqXP_027179811.18e-99single myb histone 6 isoform X1
TrEMBLA0A068U2432e-97A0A068U243_COFCA; Uncharacterized protein
STRINGXP_009786348.11e-95(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235