PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_121939_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 143aa MW: 16524.7 Da PI: 10.1227

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_121939_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.3e-12	57	110	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 ++ hn+ Er RR r+N ++ Lr llP + +skK s a+i+ k+ +YI ++ cra_locus_121939_iso_1_len_538_ver_3 57 KKLQHNAKERIRRMRLNASYLALRALLPDiS--RRSKKrWSAAAIVDKVLKYIPEM 110 5778***********************76..466666************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.28E-13	55	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.493	56	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-9	58	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-11	58	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.95E-5	61	115	No hit	No description
SMART	SM00353	2.1E-6	62	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MEKNTRDDND ADEEEVVISK MSERQRRVNE LLAEKESSSA AMELGSSSAA HNNNNNKKLQ 60 HNAKERIRRM RLNASYLALR ALLPDISRRS KKRWSAAAIV DKVLKYIPEM ENEIEKLKLS 120 KDNAKKKQQE EQLQMSEKQS LTV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087740.1	1e-29	transcription factor bHLH100
Swissprot	F4I8F9	3e-15	BH160_ARATH; Transcription factor bHLH160
TrEMBL	A0A2R6RGL8	8e-27	A0A2R6RGL8_ACTCH; Transcription factor bHLH100 like
STRING	XP_010243481.1	1e-24	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15451	6	7

Publications ? help Back to Top
Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014]