PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12235_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 346aa    MW: 38839.9 Da    PI: 7.1535
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12235_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.97.2e-3527121195
                                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgk 72 
                                           + pGfrF+Ptdeel+++yLkkk+eg++  + evi+e+di+++ePwdLp k++ ++++ew+fFs+r +ky++g+
  cra_locus_12235_iso_3_len_1557_ver_3  27 MFPGFRFSPTDEELICYYLKKKLEGSDKCV-EVIPEIDICRHEPWDLPaKSIIQSDNEWFFFSPRGRKYPNGS 98 
                                           579************************777.99***************767778899**************** PP

                                   NAM  73 rknratksgyWkatgkdkevlsk 95 
                                           +++rat+ gyWkatgk+++v+ k
  cra_locus_12235_iso_3_len_1557_ver_3  99 QSKRATACGYWKATGKERNVKWK 121
                                           *******************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-3721122IPR003441NAC domain
PROSITE profilePS5100530.95727195IPR003441NAC domain
PfamPF023651.4E-1629119IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEQEEKKEVF VLSRKNMEIS IAEASSMFPG FRFSPTDEEL ICYYLKKKLE GSDKCVEVIP  60
EIDICRHEPW DLPAKSIIQS DNEWFFFSPR GRKYPNGSQS KRATACGYWK ATGKERNVKW  120
KNIEFNLDEN PRKGSAGQRH SSTLANDVAA LSVVEQNGGK AGTLVADSCS KEGSSSYNSH  180
SVEQNDSWFD SVDKTTNEIS PHGSSSCRQF QGSDRNEEDW FADIMNDDII KLDESSLTAN  240
PHLLPTAPGE PQPKITSTEP SRVIAPAALP FQGTANRRLR LRRPKIELKN ATPLTAYESG  300
VVTLTRELVH SQDSQKSQKN LGMAIKHRVV LVLFVIILVL LLYMKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-272611816107NO APICAL MERISTEM PROTEIN
1ut4_B3e-272611816107NO APICAL MERISTEM PROTEIN
1ut7_A3e-272611816107NO APICAL MERISTEM PROTEIN
1ut7_B3e-272611816107NO APICAL MERISTEM PROTEIN
3swm_A4e-272611819110NAC domain-containing protein 19
3swm_B4e-272611819110NAC domain-containing protein 19
3swm_C4e-272611819110NAC domain-containing protein 19
3swm_D4e-272611819110NAC domain-containing protein 19
3swp_A4e-272611819110NAC domain-containing protein 19
3swp_B4e-272611819110NAC domain-containing protein 19
3swp_C4e-272611819110NAC domain-containing protein 19
3swp_D4e-272611819110NAC domain-containing protein 19
4dul_A3e-272611816107NAC domain-containing protein 19
4dul_B3e-272611816107NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083181.11e-110NAC domain-containing protein 60-like
RefseqXP_027182754.11e-110NAC domain-containing protein 60-like
TrEMBLA0A068UGV51e-107A0A068UGV5_COFCA; Uncharacterized protein
STRINGXP_009758643.18e-99(Nicotiana sylvestris)