PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12235_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 354aa MW: 39523.7 Da PI: 7.238

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12235_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	55.9	1.5e-17	27	75	1	50
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50 + pGfrF+Ptdeel+++yLkkk+eg++ + evi+e+di+++ePwdLp k cra_locus_12235_iso_4_len_1579_ver_3 27 MFPGFRFSPTDEELICYYLKKKLEGSDKCV-EVIPEIDICRHEPWDLPGK 75 579**********************777.99************932 PP
2	NAM	39.9	1.3e-12	74	114	87	128
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gk+ +v+s +++++g+k+tLvf++grapkg++t+W+mhey + cra_locus_12235_iso_4_len_1579_ver_3 74 GKNXNVKS-GSAVIGTKRTLVFHTGRAPKGQRTEWIMHEYCM 114 56778888.9999***************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	16.734	1	130	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-34	21	129	IPR003441	NAC domain
Pfam	PF02365	1.6E-14	29	113	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MEQEEKKEVF VLSRKNMEIS IAEASSMFPG FRFSPTDEEL ICYYLKKKLE GSDKCVEVIP 60 EIDICRHEPW DLPGKNXNVK SGSAVIGTKR TLVFHTGRAP KGQRTEWIMH EYCMSGKAQD 120 LMVVCRLRKN IEFNLDENPR KGSAGQRHSS TLANDVAALS VVEQNGGKAG TLVADSCSKE 180 GSSSYNSHSV EQNDSWFDSV DKTTNEISPH GSSSCRQFQG SDRNEEDWFA DIMNDDIIKL 240 DESSLTANPH LLPTAPGEPQ PKITSTEPSR VIAPAALPFQ GTANRRLRLR RPKIELKNAT 300 PLTAYESGVV TLTRELVHSQ DSQKSQKNLG MAIKHRVVLV LFVIILVLLL YMKL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MEQEEKKEVF VLSRKNMEIS IAEASSMFPG FRFSPTDEEL ICYYLKKKLE GSDKCVEVIP  60
EIDICRHEPW DLPGKNXNVK SGSAVIGTKR TLVFHTGRAP KGQRTEWIMH EYCMSGKAQD  120
LMVVCRLRKN IEFNLDENPR KGSAGQRHSS TLANDVAALS VVEQNGGKAG TLVADSCSKE  180
GSSSYNSHSV EQNDSWFDSV DKTTNEISPH GSSSCRQFQG SDRNEEDWFA DIMNDDIIKL  240
DESSLTANPH LLPTAPGEPQ PKITSTEPSR VIAPAALPFQ GTANRRLRLR RPKIELKNAT  300
PLTAYESGVV TLTRELVHSQ DSQKSQKNLG MAIKHRVVLV LFVIILVLLL YMKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027083181.1	1e-120	NAC domain-containing protein 60-like
Refseq	XP_027182754.1	1e-120	NAC domain-containing protein 60-like
TrEMBL	A0A068UGV5	1e-118	A0A068UGV5_COFCA; Uncharacterized protein
STRING	XP_009758643.1	1e-102	(Nicotiana sylvestris)