PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12315_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 507aa    MW: 55715.1 Da    PI: 7.1546
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12315_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.1e-16326372455
                                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                            hn  ErrRRdriN+++  L+ellP++      K +Ka++L +A+eY+ksLq
  cra_locus_12315_iso_3_len_2534_ver_3 326 VHNLSERRRRDRINEKMRALQELLPHS-----NKSDKASMLDEAIEYMKSLQ 372
                                           6*************************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-19320384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.64E-17325376No hitNo description
PfamPF000102.0E-13326372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-19326381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-17328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MYPCFPDWNI EAELPVLHQK KPFGLEHELV ELLWENGQVV LHSQTHRKSG PAGVPDHPFD  60
SSTRQLNNNN NSNNKQATTS CGNPTATLIQ DNDTVSWIHC QVDDPFDKEF SSNFLPVIPL  120
PTPQLEDPPH KQQIQHCRTH PSTNFGPNPL PAPRFQSDSN NVRGGVSKCP NVLLKADLGS  180
SNSGPRPSSH MIIGEVREYS MRTVGSSHCG SNQVAMDADT SRASSCGIGN NDLSAAAVVK  240
DYEGKLGSQN YERGERETHE LANTSSSGGS GTSFGRTCTA TDSLKRKSRD AEDSECQSEA  300
AVLESEARKK PASKSGIARK SRAAEVHNLS ERRRRDRINE KMRALQELLP HSNKSDKASM  360
LDEAIEYMKS LQLQLQMMWM RSGMAPLMFP GVQHYMSRLG MGIGPPTLPP VPNPMHLSRL  420
PLVDQTMTVA SAPNQAALCP TSVINPINYQ NQLQNSNFSE QYATYMGFHH PMQTSSQPIN  480
VFGFNSNMTQ QNHNFAPPSN TNGSSAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330335ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061311.11e-171transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_027061312.11e-171transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_027061313.11e-171transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
TrEMBLA0A0N7HUP60.0A0A0N7HUP6_CATRO; Phytochrome interacting factor 5-like protein
STRINGXP_006485007.11e-166(Citrus sinensis)
STRINGXP_009757612.11e-166(Nicotiana sylvestris)