PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12433_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 207aa    MW: 23857.7 Da    PI: 6.8148
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12433_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-1954106456
                                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                          ++++++eq++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa+++
  cra_locus_12433_iso_1_len_704_ver_3  54 KRKLSQEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWR 106
                                          4589************************************************9 PP
2HD-ZIP_I/II115.14.2e-3753144293
                          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 
                                          +kr+ls+eqv+lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+++k+lE++y++Lk+++++ + 
  cra_locus_12433_iso_1_len_704_ver_3  53 RKRKLSQEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWRSKKLEEEYSKLKSEHENNVV 126
                                          8************************************************************************* PP

                          HD-ZIP_I/II  76 enerLekeveeLreelke 93 
                                          e++rLe+ev +L+e+l e
  cra_locus_12433_iso_1_len_704_ver_3 127 EKCRLETEVLKLKEQLIE 144
                                          **************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.55248108IPR001356Homeobox domain
SMARTSM003892.8E-1651112IPR001356Homeobox domain
SuperFamilySSF466895.56E-1753117IPR009057Homeodomain-like
CDDcd000866.15E-1553109No hitNo description
PfamPF000463.0E-1654106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.9E-2055115IPR009057Homeodomain-like
PRINTSPR000311.3E-57988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000311.3E-588104IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSSHQEVDDQ MVLISQYYPG IYTQLMPAEQ GAAKPRRRRK KNKGEGSGNG VMRKRKLSQE  60
QVNLLELNFG NEHKLESERK DRLASELGLD PRQVAVWFQN RRARWRSKKL EEEYSKLKSE  120
HENNVVEKCR LETEVLKLKE QLIEAEKEIQ RLLERGGSDG LSSNTSPSSS FSMEPPFLGG  180
EFGMEGLEKV FYVPESSYIP EMEWAGX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13654RRRKKNKGEGSGNGVMRKR
23855RKKNKGEGSGNGVMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065260.12e-94homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-74ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A068U2N91e-93A0A068U2N9_COFCA; Uncharacterized protein
STRINGSolyc02g085630.2.13e-93(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]