PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12436_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

CO-like

Protein Properties

Length: 433aa MW: 47069.7 Da PI: 5.475

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12436_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.7	7.3e-06	46	75	4	33
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCllee 33 +C++++++++++ C +++ lC+ C ++ cra_locus_12436_iso_1_len_2031_ver_3 46 LICDKCNSQPATIRCIEDKISLCQGCNWNG 75 69************************7555 PP
2	CCT	61.1	3.5e-21	377	420	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F K+irY+sRKa+A++R RvKGrFvk+ cra_locus_12436_iso_1_len_2031_ver_3 377 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRRRVKGRFVKAG 420 899**************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.044	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	2.6E-7	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	6.34E-5	3	47	No hit	No description
PROSITE profile	PS51017	14.614	377	419	IPR010402	CCT domain
Pfam	PF06203	4.3E-16	377	419	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MDPLCEFCGV VRAVVYCRSD AAKLCLHCDS CVHSANSLSR RHERSLICDK CNSQPATIRC 60 IEDKISLCQG CNWNGNGCSG PGHHRQKLSF YSGCPSLAEF SRIWSSVLDL PIPTNFDSTT 120 NYSTLNINEN STINSCSEPK GGDEGPPIGL VANRLNELAS CVKFEPWITP PPPPPAVIPP 180 NTNYVHAPFL TEESGIPKDG SPNAKDLGIH EGDDGLCEGV DLDDVALMLE NTGYDMLGNP 240 EVNSRYCRED GALGCLTMEK NLSVTESNSQ VENALEASSS GQQDCLGFQS SRICSSANLI 300 QNLSASSNCL LMNPSSNRNI GLGFPPGQVH SSISLSLSNI TGESSAADYQ DCGLSPVFLT 360 GESPWEPSLE ASCPQARDKA KMRYNEKKKT RTFGKQIRYA SRKARADTRR RVKGRFVKAG 420 EAYDYDPLVT RDF

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MDPLCEFCGV VRAVVYCRSD AAKLCLHCDS CVHSANSLSR RHERSLICDK CNSQPATIRC  60
IEDKISLCQG CNWNGNGCSG PGHHRQKLSF YSGCPSLAEF SRIWSSVLDL PIPTNFDSTT  120
NYSTLNINEN STINSCSEPK GGDEGPPIGL VANRLNELAS CVKFEPWITP PPPPPAVIPP  180
NTNYVHAPFL TEESGIPKDG SPNAKDLGIH EGDDGLCEGV DLDDVALMLE NTGYDMLGNP  240
EVNSRYCRED GALGCLTMEK NLSVTESNSQ VENALEASSS GQQDCLGFQS SRICSSANLI  300
QNLSASSNCL LMNPSSNRNI GLGFPPGQVH SSISLSLSNI TGESSAADYQ DCGLSPVFLT  360
GESPWEPSLE ASCPQARDKA KMRYNEKKKT RTFGKQIRYA SRKARADTRR RVKGRFVKAG  420
EAYDYDPLVT RDF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027172036.1	0.0	putative zinc finger protein CONSTANS-LIKE 11
TrEMBL	A0A068UW26	0.0	A0A068UW26_COFCA; Uncharacterized protein
STRING	evm.model.supercontig_8.239	1e-179	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4231	17	26